0 |
1 |
iJR904 |
10.1186/gb-2003-4-9-r54 |
Reed |
2003 |
[sbml] |
Escherichia coli str. K12 substr. MG1655 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
1 |
2 |
iAF1260 |
10.1038/msb4100155 |
Feist |
2007 |
[sbml] |
Escherichia coli str. K12 substr. MG1655 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
2 |
3 |
iMM904 |
10.1186/1752-0509-3-37 |
Mo |
2007 |
[sbml] |
Saccharomyces cerevisiae |
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... |
True |
3 |
4 |
iJP815 |
10.1371/journal.pcbi.1000210 |
Puchalka |
2008 |
[sbml] |
Pseudomonas putida str. KT2440 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
4 |
5 |
iMO1056 |
10.1128/JB.01583-07 |
Oberhardt |
2008 |
[excel] |
Pseudomonas aeruginosa str. PAO1 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
False |
5 |
6 |
iIN800 |
10.1186/1752-0509-2-71 |
Nookaew |
2008 |
[sbml] |
Saccharomyces cerevisiae |
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... |
False |
6 |
7 |
iFF708 |
10.1101/gr.234503 |
Förster |
2003 |
[sbml] |
Saccharomyces cerevisiae str. Sc288 |
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... |
False |
7 |
8 |
iCA1273 |
10.1186/1471-2164-12-9 |
Archer |
2011 |
[sbml] |
Escherichia coli W |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
8 |
9 |
iJO1366 |
10.1038/msb.2011.65 |
Orth |
2011 |
[sbml] |
Escherichia coli str. K12 substr. MG1655 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
9 |
10 |
yeast 4.0 |
10.1186/1752-0509-4-145 |
Dobson |
2010 |
[] |
Yeast |
Eukaryota; Opisthokonta; Fungi; |
False |
10 |
11 |
iJN746 |
10.1186/1752-0509-2-79 |
Nogales |
2008 |
[sbml] |
Pseudomonas putida str. KT2440 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
11 |
12 |
AbyMBEL891 |
10.1039/B916446D |
Kim |
2010 |
[sbml] |
Acinetobacter baumannii AYE |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
False |
12 |
13 |
iJP962 |
10.1371/journal.pcbi.1001116 |
Oberhardt |
2011 |
[sbml] |
Pseudomonas putida str. KT2440 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
13 |
14 |
iYL1228 |
10.1128/JB.01218-10 |
Liao |
2011 |
[sbml] |
Klebsiella pneumoniae str. MGH 78578 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
14 |
15 |
iSR432 |
10.1186/1752-0509-4-31 |
Roberts |
2010 |
[sbml] |
Clostridium thermocellum str. ATCC 27405 |
Bacteria; Firmicutes; Clostridia; Clostridial... |
True |
15 |
16 |
iNJ661m |
10.1186/1752-0509-4-160 |
Fang |
2010 |
[sbml] |
Mycobacterium tuberculosis str. H37Rv |
Bacteria; Actinobacteria; Actinobacteria; Acti... |
True |
16 |
17 |
iCM925 |
10.1186/1752-0509-5-130 |
Milne |
2011 |
[sbml] |
Clostridium beijerinckii str. NCIMB 8052 |
Bacteria; Firmicutes; Clostridia; Clostridiale... |
True |
17 |
18 |
iBsu1103 |
10.1186/gb-2009-10-6-r69 |
Henry |
2009 |
[sbml] |
Bacillus subtilis 168 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bac... |
True |
18 |
19 |
iAI549 |
10.1371/journal.pcbi.1000887 |
Islam |
2010 |
[sbml] |
Dehalococcoides ethenogenes str. 2061 |
Bacteria; Chloroflexi; Dehalococcoidetes; Deha... |
True |
19 |
20 |
iAF692 |
10.1038/msb4100046 |
Feist |
2006 |
[sbml] |
Methanosarcina barkeri |
Archaea; Euryarchaeota; Methanomicrobia; Metha... |
True |
20 |
21 |
AraGEM |
10.1186/1471-2164-12-S4-S5 |
de Oliveira Dal'Molin |
2010 |
[sbml] |
Arabidopsis thaliana |
Eukaryota; Viridiplantae; Streptophyta; Strept... |
True |
21 |
22 |
Ecoli core Model |
doi:10.1128/ecosalplus.10.2.1 |
Orth |
2010 |
[sbml] |
Escherichia coli str. K12 substr. MG1655 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
True |
22 |
23 |
iIT341 |
10.1128/JB.187.16.5818-5830.2005 |
Thiele |
2005 |
[sbml] |
Helicobacter pylori str. 26695 |
Bacteria; Proteobacteria; delta/epsilon subdi... |
True |
23 |
24 |
iMH805/775 |
10.1038/nbt1492 |
Herrgård |
2008 |
[sbml] |
Saccharomyces cerevisiae str. Sc288 |
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... |
False |
24 |
25 |
iND750 |
10.1101/gr.2250904 |
Duarte |
2004 |
[sbml] |
Saccharomyces cerevisiae str. Sc288 |
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... |
True |
25 |
26 |
iRC1080 |
10.1038/msb.2011.52 |
Chang |
2011 |
[sbml] |
Chlamydomonas reinhardtii |
Eukaryota; Viridiplantae; Chlorophyta; Chlorop... |
True |
26 |
27 |
iSB619 |
10.1186/1471-2180-5-8 |
Becker |
2005 |
[sbml] |
Staphylococcus aureus |
Bacteria; Firmicutes; Bacilli; Bacillales; St... |
True |
27 |
28 |
iTH366 |
10.1038/msb.2010.60 |
Plata |
2010 |
[sbml] |
Plasmodium falciparum |
Eukaryota; Alveolata; Apicomplexa; Aconoidasid... |
True |
28 |
29 |
iTZ479 |
10.1126/science.1174671 |
Zhang |
2009 |
[sbml] |
Thermotoga maritima str. MSB8 |
Bacteria; Thermotogae; Thermotogae; Thermotoga... |
True |
29 |
30 |
recon2 |
10.1038/nbt.2488 |
Thiele |
2013 |
[sbml] |
Homo sapiens |
Eukaryota; Opisthokonta; Metazoa; Eumetazoa; B... |
True |
... |
... |
... |
... |
... |
... |
... |
... |
... |
... |
118 |
123 |
iCyc792 |
10.1186/1752-0509-7-142 |
Mueller |
2013 |
[sbml, excel] |
Cyanothece sp. PCC 7424 |
Bacteria; Cyanobacteria; Oscillatoriophycideae... |
False |
119 |
124 |
iCyn731 |
10.1186/1752-0509-7-142 |
Mueller |
2013 |
[sbml, excel] |
Cyanothece sp. PCC 7425 |
Bacteria; Cyanobacteria; Oscillatoriophycideae... |
False |
120 |
125 |
iCyj826 |
10.1186/1752-0509-7-142 |
Mueller |
2013 |
[sbml, excel] |
Cyanothece sp. PCC 7822 |
Bacteria; Cyanobacteria; Oscillatoriophycideae... |
False |
121 |
126 |
iCyp752 |
10.1186/1752-0509-7-142 |
Mueller |
2013 |
[sbml, excel] |
Cyanothece sp. PCC 8801 |
Bacteria; Cyanobacteria; Oscillatoriophycideae... |
False |
122 |
127 |
iCyh755 |
10.1186/1752-0509-7-142 |
Mueller |
2013 |
[sbml, excel] |
Cyanothece sp. PCC 8802 |
Bacteria; Cyanobacteria; Oscillatoriophycideae... |
False |
123 |
128 |
iNF518 |
10.1007/s00253-013-5140-2 |
Flahaut |
2013 |
[sbml] |
Lactococcus lactis subsp. cremoris MG1363 |
Bacteria; Firmicutes; Bacilli; Lactobacillales... |
True |
124 |
129 |
iJL1454 |
10.1039/C3MB70090A |
Jie Liu |
2013 |
[excel] |
Aspergillus terreus NIH2624 |
Eukaryota; Opisthokonta; Fungi; Dikarya; Ascom... |
False |
125 |
130 |
iBif452 |
10.1186/1752-0509-8-41 |
El-Semman |
2014 |
[sbml, excel] |
Bifidobacterium adolescentis L2-32 |
Bacteria; Actinobacteria; Actinobacteria; Acti... |
False |
126 |
131 |
iFap484 |
10.1186/1752-0509-8-41 |
El-Semman |
2014 |
[sbml, excel] |
Faecalibacterium prausnitzii A2-165 |
Bacteria; Firmicutes; Clostridia; Clostridiale... |
False |
127 |
132 |
iAM388 |
10.1186/1471-2164-12-535 |
Aline Metris |
2011 |
[excel] |
Campylobacter jejuni subsp. jejuni NCTC 11168 |
Bacteria; Proteobacteria; delta/epsilon subdiv... |
False |
128 |
133 |
iTT548 |
10.1186/1475-2859-13-61 |
Na-Rae Lee |
2014 |
[sbml, excel] |
Thermus thermophilus |
Bacteria; Deinococcus-Thermus; Deinococci; The... |
True |
129 |
134 |
EctoGEM-1.0 |
10.1111/tpj.12627 |
Prigent |
2014 |
[sbml] |
Ectocarpus siliculosus |
Eukaryota; Stramenopiles; PX clade; Phaeophyce... |
False |
130 |
135 |
iMF721 |
10.1111/1462-2920.12513 |
Fondi |
2014 |
[sbml] |
Pseudoalteromonas haloplanktis TAC125 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
False |
131 |
136 |
Arabidopsis core model |
10.1104/pp.114.235358 |
Arnold |
2014 |
[sbml] |
Arabidopsis thaliana |
Eukaryota; Viridiplantae; Streptophyta; Strept... |
False |
132 |
137 |
iHN637 |
10.1186/1475-2859-12-118 |
Harish Nagarajan |
2013 |
[excel] |
Clostridium ljungdahlii |
Bacteria; Firmicutes; Clostridia; Clostridiale... |
False |
133 |
138 |
iCac802 |
10.1186/s13068-014-0144-4 |
Satyakam Dash |
2014 |
[sbml] |
Clostridium acetobutylicum ATCC 824 |
Bacteria; Firmicutes; Clostridia; Clostridiale... |
True |
134 |
139 |
iMLTC806cdf |
10.1186/s12918-014-0117-z |
M. Larocque |
2014 |
[sbml, excel] |
Clostridium difficile 630 |
Bacteria; Firmicutes; Clostridia; Clostridiale... |
True |
135 |
140 |
iCY1106 |
10.1186/s12918-014-0137-8 |
Chao Ye |
2015 |
[sbml] |
Mortierella alpina |
Eukaryota; Opisthokonta; Fungi; Fungi incertae... |
False |
136 |
141 |
iMM518 |
10.1039/c3mb70421a |
N. Goyal |
2014 |
[excel] |
Methanococcus maripaludis S2 |
Archaea; Euryarchaeota; Methanococci; Methanoc... |
False |
137 |
142 |
iPC1209 |
10.1016/j.febslet.2014.12.010 |
Cheng Wang |
2015 |
[] |
Pectobacterium carotovorum subsp. carotovorum PC1 |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
False |
138 |
143 |
iNV706 |
10.1128/AEM.03279-14 |
N. Veith |
2014 |
[] |
Enterococcus faecalis V583 |
Bacteria; Firmicutes; Bacilli; Lactobacillales... |
False |
139 |
144 |
KoxGSC1457 |
10.1186/1475-2859-12-20 |
J. Park |
2013 |
[] |
Klebsiella oxytoca |
Bacteria; Proteobacteria; Gammaproteobacteria;... |
False |
140 |
145 |
iJL846 |
10.1016/j.gene.2014.10.034 |
Jie Liu |
2015 |
[] |
Lactobacillus casei LC2W |
Bacteria; Firmicutes; Bacilli; Lactobacillales... |
False |
141 |
146 |
yeast 7.6 |
10.1089/ind.2013.0013 |
Aung (updated) |
2015 |
[sbml] |
Yeast |
Eukaryota; Opisthokonta; Fungi; |
False |
142 |
147 |
iJK849 |
10.1111/tpj.13081 |
Joomi Kim |
2015 |
[sbml, excel] |
Phaeodactylum tricornutum |
Eukaryota; Stramenopiles; Bacillariophyta; Bac... |
True |
143 |
148 |
iNL895 |
10.1186/1752-0509-6-35 |
Nicolas Loira |
2012 |
[sbml] |
Yarrowia lipolytica |
Eukaryota; Fungi; Dikarya; Ascomycota; Sacchar... |
False |
144 |
149 |
iYali4 |
10.1038/npjsba.2016.5 |
Kerkhoven |
2016 |
[sbml] |
Yarrowia lipolytica |
Eukaryota; Fungi; Dikarya; Ascomycota; Sacchar... |
False |
145 |
150 |
iLB1027_lipid |
10.1371/journal.pone.0155038 |
Jennifer Levering |
2016 |
[sbml] |
Phaeodactylum tricornutum |
Eukaryota; Stramenopiles; Bacillariophyta; Bac... |
True |
146 |
151 |
iLB1027 |
10.1371/journal.pone.0155038 |
Jennifer Levering |
2016 |
[sbml] |
Phaeodactylum tricornutum |
Eukaryota; Stramenopiles; Bacillariophyta; Bac... |
True |
147 |
152 |
iMT1174 |
10.1186/s12918-015-0190-y |
Mohammad Tajparast |
2015 |
[excel] |
Rhodococcus jostii RHA1 |
Bacteria; Terrabacteria group; Actinobacteria;... |
False |