cameo.models package

Submodules

cameo.models.universal module

cameo.models.webmodels module

WebModels API

A high level API for retrieving models from the http://darwin.di.uminho.pt/models and http://bigg.ucsd.edu databases

cameo.models.webmodels.index_models_minho(host='http://darwin.di.uminho.pt/models')

Retrieves a summary of all models in the database.

Parameters

host (the service host (optional, default: http://darwin.di.uminho.pt/models)) –

Returns

summary of the models in the database

Return type

pandas.DataFrame

cameo.models.webmodels.index_models_bigg()

Module contents

This sub-package provides access (an function internet connection is needed to models available on the BiGG database (http://bigg.ucsd.edu) and a model repository hosted by the University of Minho (http://optflux.org/models). Furthermore, it provides universal reaction database models compiled from different sources (KEGG, RHEA, BIGG, BRENDA) and that have been obtained from http://metanetx.org